Sophiar2/app/data/tka_ar_navigation.json

{
  "variable_list": [
    {
      "name": "probe_in_tracker",
      "type": "transform_obj"
    },
    {
      "name": "femur_ref_in_tracker",
      "type": "transform_obj"
    },
    {
      "name": "femur_in_femur_ref",
      "type": "transform_obj",
      "value": [
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        0.490098,
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      ]
    },
    {
      "name": "tibia_ref_in_tracker",
      "type": "transform_obj"
    },
    {
      "name": "tibia_in_tibia_ref",
      "type": "transform_obj"
    },
    {
      "name": "camera_ref_in_tracker",
      "type": "transform_obj"
    },
    {
      "name": "left_camera_in_tracker",
      "type": "transform_obj"
    },
    {
      "name": "right_camera_in_tracker",
      "type": "transform_obj"
    },
    {
      "name": "femur_in_tracker",
      "type": "transform_obj"
    },
    {
      "name": "tibia_in_tracker",
      "type": "transform_obj"
    },
    {
      "name": "probe_in_femur_ref",
      "type": "transform_obj"
    },
    {
      "name": "probe_in_tibia_ref",
      "type": "transform_obj"
    },
    {
      "name": "probe_in_femur",
      "type": "transform_obj"
    },
    {
      "name": "probe_in_tibia",
      "type": "transform_obj"
    },
    {
      "name": "probe_tip_in_femur_ref",
      "type": "scalarxyz_obj"
    },
    {
      "name": "probe_tip_in_tibia_ref",
      "type": "scalarxyz_obj"
    },
    {
      "name": "picked_point_in_femur_ref",
      "type": "scalarxyz_obj"
    },
    {
      "name": "picked_point_in_tibia_ref",
      "type": "scalarxyz_obj"
    },
    {
      "name": "femur_in_femur_ref_error",
      "type": "double_obj"
    },
    {
      "name": "tibia_in_tibia_ref_error",
      "type": "double_obj"
    },
    {
      "name": "probe_tip_in_femur",
      "type": "scalarxyz_obj"
    },
    {
      "name": "probe_tip_in_tibia",
      "type": "scalarxyz_obj"
    },
    {
      "name": "picked_point_in_femur",
      "type": "scalarxyz_obj"
    },
    {
      "name": "picked_point_in_tibia",
      "type": "scalarxyz_obj"
    }
  ],
  "object_list": [
    {
      "type": "transform_tree",
      "name": "transform_tree",
      "init_config": {
        "node_list": [
          {
            "name": "tracker"
          },
          {
            "name": "probe_ref",
            "parent": "tracker",
            "transform_var_name": "probe_in_tracker"
          },
          {
            "name": "probe",
            "parent": "probe_ref",
            "transform": [
              -0.23,
              -13.98,
              -119.65,
              1,
              0,
              0,
              0
            ]
          },
          {
            "name": "femur_ref",
            "parent": "tracker",
            "transform_var_name": "femur_ref_in_tracker"
          },
          {
            "name": "femur",
            "parent": "femur_ref",
            "transform_var_name": "femur_in_femur_ref"
          },
          {
            "name": "tibia_ref",
            "parent": "tracker",
            "transform_var_name": "tibia_ref_in_tracker"
          },
          {
            "name": "tibia",
            "parent": "tibia_ref",
            "transform_var_name": "tibia_in_tibia_ref"
          },
          {
            "name": "camera_ref",
            "parent": "tracker",
            "transform_var_name": "camera_ref_in_tracker"
          },
          {
            "name": "left_camera",
            "parent": "camera_ref",
            "transform": [
              -11.3375,
              21.2730,
              -37.5694,
              0.0009,
              -0.7088,
              -0.0091,
              0.7053
            ]
          },
          {
            "name": "right_camera",
            "parent": "camera_ref",
            "transform": [
              -11.2100,
              22.1807,
              -97.3032,
              0.0011,
              0.7066,
              0.0120,
              -0.7075
            ]
          }
        ]
      },
      "start_config": {
        "watch_list": [
          {
            "target": "left_camera",
            "observer": "tracker",
            "transform_var_name": "left_camera_in_tracker"
          },
          {
            "target": "right_camera",
            "observer": "tracker",
            "transform_var_name": "right_camera_in_tracker"
          },
          {
            "target": "femur",
            "observer": "tracker",
            "transform_var_name": "femur_in_tracker"
          },
          {
            "target": "tibia",
            "observer": "tracker",
            "transform_var_name": "tibia_in_tracker"
          },
          {
            "target": "probe",
            "observer": "femur_ref",
            "transform_var_name": "probe_in_femur_ref"
          },
          {
            "target": "probe",
            "observer": "tibia_ref",
            "transform_var_name": "probe_in_tibia_ref"
          },
          {
            "target": "probe",
            "observer": "femur",
            "transform_var_name": "probe_in_femur"
          },
          {
            "target": "probe",
            "observer": "tibia",
            "transform_var_name": "probe_in_tibia"
          }
        ]
      }
    },
    {
      "type": "ndi_interface",
      "name": "ndi",
      "init_config": {
        "address_type": "ethernet",
        "ip": "10.0.0.5",
        "tcp_port": 8765,
        "com_port": "COM3",
        "tool_list": [
          {
            "rom_path": "/home/tpx/data/roms/GlassProbe_4Ball_4.rom",
            "outputs": {
              "transform": "probe_in_tracker"
            }
          },
          {
            "rom_path": "/home/tpx/data/roms/Glass_4Ball_1.rom",
            "outputs": {
              "transform": "camera_ref_in_tracker"
            }
          },
          {
            "rom_path": "/home/tpx/data/roms/Glass_3Ball_6.rom",
            "outputs": {
              "transform": "femur_ref_in_tracker"
            }
          },
          {
            "rom_path": "/home/tpx/data/roms/Glass_3Ball_5.rom",
            "outputs": {
              "transform": "tibia_ref_in_tracker"
            }
          }
        ]
      },
      "start_config": {
        "allow_unreliable": true,
        "prefer_stream_tracking": false
      }
    },
    {
      "type": "transform_obj_validity_watcher",
      "name": "probe_visibility_watcher",
      "start_config": {
        "variable_name": "probe_in_tracker"
      }
    },
    {
      "type": "transform_obj_validity_watcher",
      "name": "camera_visibility_watcher",
      "start_config": {
        "variable_name": "camera_ref_in_tracker"
      }
    },
    {
      "type": "transform_obj_validity_watcher",
      "name": "femur_visibility_watcher",
      "start_config": {
        "variable_name": "femur_ref_in_tracker"
      }
    },
    {
      "type": "transform_obj_validity_watcher",
      "name": "tibia_visibility_watcher",
      "start_config": {
        "variable_name": "tibia_ref_in_tracker"
      }
    },
    {
      "type": "scalarxyz_transformer",
      "name": "probe_tip_in_femur_ref_transformer",
      "start_config": {
        "transform_type": "point",
        "transform_var_name": "probe_in_femur_ref",
        "target_value": [
          0,
          0,
          0
        ],
        "output_var_name": "probe_tip_in_femur_ref"
      },
      "dependencies": [
        "ndi",
        "transform_tree"
      ]
    },
    {
      "type": "scalarxyz_transformer",
      "name": "probe_tip_in_tibia_ref_transformer",
      "start_config": {
        "transform_type": "point",
        "transform_var_name": "probe_in_tibia_ref",
        "target_value": [
          0,
          0,
          0
        ],
        "output_var_name": "probe_tip_in_tibia_ref"
      },
      "dependencies": [
        "ndi",
        "transform_tree"
      ]
    },
    {
      "type": "transform_stabilizer",
      "name": "point_picker_in_femur_ref",
      "start_config": {
        "stable_type": "point",
        "input_var_name": "probe_tip_in_femur_ref",
        "output_var_name": "picked_point_in_femur_ref",
        "linear_tolerance_mm": 0.05,
        "temporal_interval_s": 3
      },
      "dependencies": [
        "probe_tip_in_femur_ref_transformer"
      ]
    },
    {
      "type": "transform_stabilizer",
      "name": "point_picker_in_tibia_ref",
      "start_config": {
        "stable_type": "point",
        "input_var_name": "probe_tip_in_tibia_ref",
        "output_var_name": "picked_point_in_tibia_ref",
        "linear_tolerance_mm": 0.05,
        "temporal_interval_s": 3
      },
      "dependencies": [
        "probe_tip_in_tibia_ref_transformer"
      ]
    },
    {
      "type": "scalarxyz_obj_watcher",
      "name": "picked_point_watcher_for_femur_ref",
      "start_config": {
        "variable_name": "picked_point_in_femur_ref"
      }
    },
    {
      "type": "scalarxyz_obj_watcher",
      "name": "picked_point_watcher_for_tibia_ref",
      "start_config": {
        "variable_name": "picked_point_in_tibia_ref"
      }
    },
    {
      "type": "landmark_registration",
      "name": "femur_landmark",
      "start_config": {
        "fiducial_points": [
          [
            1.68412,
            22.5766,
            202.831
          ],
          [
            13.5083,
            -24.1831,
            200.386
          ],
          [
            26.621,
            2.0151,
            191.341
          ]
        ],
        "point_var_name": "picked_point_in_femur_ref",
        "transform_var_name": "femur_in_femur_ref",
        "error_var_name": "femur_in_femur_ref_error"
      },
      "dependencies": [
        "point_picker_in_femur_ref"
      ]
    },
    {
      "type": "transform_obj_watcher",
      "name": "femur_registration_result_watcher",
      "start_config": {
        "variable_name": "femur_in_femur_ref"
      }
    },
    {
      "type": "double_obj_watcher",
      "name": "femur_registration_error_watcher",
      "start_config": {
        "variable_name": "femur_in_femur_ref_error"
      }
    },
    {
      "type": "scalarxyz_transformer",
      "name": "probe_tip_in_femur_transformer",
      "start_config": {
        "transform_type": "point",
        "transform_var_name": "probe_in_femur",
        "target_value": [
          0,
          0,
          0
        ],
        "output_var_name": "probe_tip_in_femur"
      },
      "dependencies": [
        "ndi",
        "transform_tree"
      ]
    },
    {
      "type": "transform_stabilizer",
      "name": "point_picker_in_femur",
      "start_config": {
        "stable_type": "point",
        "input_var_name": "probe_tip_in_femur",
        "output_var_name": "picked_point_in_femur",
        "linear_tolerance_mm": 0.05,
        "temporal_interval_s": 3
      },
      "dependencies": [
        "probe_tip_in_femur_transformer"
      ]
    },
    {
      "type": "scalarxyz_obj_watcher",
      "name": "picked_point_watcher_for_femur",
      "start_config": {
        "variable_name": "picked_point_in_femur"
      }
    },
    {
      "type": "empty_object",
      "name": "tracker_all",
      "dependencies": [
        "transform_tree",
        "ndi",
        "probe_visibility_watcher",
        "camera_visibility_watcher",
        "femur_visibility_watcher",
        "tibia_visibility_watcher"
      ]
    },
    {
      "type": "empty_object",
      "name": "femur_landmark_all",
      "dependencies": [
        "tracker_all",
        "femur_landmark",
        "picked_point_watcher_for_femur_ref",
        "femur_registration_result_watcher",
        "femur_registration_error_watcher"
      ]
    },
    {
      "type": "empty_object",
      "name": "femur_icp_all",
      "dependencies": [
        "tracker_all",
        "point_picker_in_femur",
        "picked_point_watcher_for_femur"
      ]
    }
  ]
}