Sophiar2/app/data/drill_navigation.json

{
  "controller_port": 5277,
  "variable_list": [
    {
      "name": "probe_in_tracker",
      "type": "transform_obj"
    },
    {
      "name": "model_ref_in_tracker",
      "type": "transform_obj"
    },
    {
      "name": "model_in_model_ref",
      "type": "transform_obj"
    },
    {
      "name": "tool_ref_in_tracker",
      "type": "transform_obj"
    },
    {
      "name": "tool_in_tool_ref",
      "type": "transform_obj"
    },
    {
      "name": "probe_in_model_ref",
      "type": "transform_obj"
    },
    {
      "name": "probe_in_model",
      "type": "transform_obj"
    },
    {
      "name": "tool_in_model",
      "type": "transform_obj"
    },
    {
      "name": "probe_in_tool_ref",
      "type": "transform_obj"
    },
    {
      "name": "tip_in_model_ref",
      "type": "scalarxyz_obj"
    },
    {
      "name": "picked_point_in_model_ref",
      "type": "scalarxyz_obj"
    },
    {
      "name": "model_in_model_ref_error",
      "type": "double_obj"
    },
    {
      "name": "picked_probe_in_tool_ref",
      "type": "transform_obj"
    }
  ],
  "object_list": [
    {
      "type": "transform_tree",
      "name": "transform_tree",
      "init_config": {
        "node_list": [
          {
            "name": "tracker"
          },
          {
            "name": "probe",
            "parent": "tracker",
            "transform_var_name": "probe_in_tracker"
          },
          {
            "name": "model_ref",
            "parent": "tracker",
            "transform_var_name": "model_ref_in_tracker"
          },
          {
            "name": "model",
            "parent": "model_ref",
            "transform_var_name": "model_in_model_ref"
          },
          {
            "name": "tool_ref",
            "parent": "tracker",
            "transform_var_name": "tool_ref_in_tracker"
          },
          {
            "name": "tool",
            "parent": "tool_ref",
            "transform_var_name": "tool_in_tool_ref"
          }
        ]
      },
      "start_config": {
        "watch_list": [
          {
            "target": "probe",
            "observer": "model_ref",
            "transform_var_name": "probe_in_model_ref"
          },
          {
            "target": "probe",
            "observer": "model",
            "transform_var_name": "probe_in_model"
          },
          {
            "target": "tool",
            "observer": "model",
            "transform_var_name": "tool_in_model"
          },
          {
            "target": "probe",
            "observer": "tool_ref",
            "transform_var_name": "probe_in_tool_ref"
          }
        ]
      }
    },
    {
      "type": "ndi_interface",
      "name": "ndi",
      "init_config": {
        "address_type": "serial",
        "ip": "10.0.0.5",
        "tcp_port": 8765,
        "com_port": "/dev/ttyUSB0",
        "tool_list": [
          {
            "rom_path": "/home/tpx/data/roms/Probe_Big.rom",
            "outputs": {
              "transform": "probe_in_tracker"
            }
          },
          {
            "rom_path": "/home/tpx/data/roms/Drill_Ref_0322_3.rom",
            "outputs": {
              "transform": "tool_ref_in_tracker"
            }
          },
          {
            "rom_path": "/home/tpx/data/roms/Head_3Ball_1.rom",
            "outputs": {
              "transform": "model_ref_in_tracker"
            }
          }
        ]
      },
      "start_config": {
        "allow_unreliable": true,
        "prefer_stream_tracking": false
      }
    },
    {
      "type": "transform_obj_validity_watcher",
      "name": "probe_visibility_watcher",
      "start_config": {
        "variable_name": "probe_in_tracker"
      }
    },
    {
      "type": "transform_obj_validity_watcher",
      "name": "model_visibility_watcher",
      "start_config": {
        "variable_name": "model_ref_in_tracker"
      }
    },
    {
      "type": "transform_obj_validity_watcher",
      "name": "tool_visibility_watcher",
      "start_config": {
        "variable_name": "tool_ref_in_tracker"
      }
    },
    {
      "type": "scalarxyz_transformer",
      "name": "probe_tip_transformer_for_reg",
      "start_config": {
        "transform_type": "point",
        "transform_var_name": "probe_in_model_ref",
        "target_value": [
          0,
          0,
          0
        ],
        "output_var_name": "tip_in_model_ref"
      },
      "dependencies": [
        "ndi",
        "transform_tree"
      ]
    },
    {
      "type": "transform_stabilizer",
      "name": "point_picker_for_reg",
      "start_config": {
        "stable_type": "point",
        "input_var_name": "tip_in_model_ref",
        "output_var_name": "picked_point_in_model_ref",
        "linear_tolerance_mm": 0.05,
        "temporal_interval_s": 3
      },
      "dependencies": [
        "probe_tip_transformer_for_reg"
      ]
    },
    {
      "type": "scalarxyz_obj_watcher",
      "name": "picked_point_watcher_for_reg",
      "start_config": {
        "variable_name": "picked_point_in_model_ref"
      }
    },
    {
      "type": "landmark_registration",
      "name": "model_registrator",
      "start_config": {
        "fiducial_points": [
          [
            185.75326529376449,
            149.3433422806243,
            37.89585779283788
          ],
          [
            154.32787238465744,
            116.4095837766868,
            28.39577397806383
          ],
          [
            137.3846660114195,
            112.52950379923068,
            27.82314813339255
          ],
          [
            116.28380784689239,
            149.60532673304985,
            28.430980391981475
          ],
          [
            151.4594107171369,
            127.58239816414866,
            33.605828902057866
          ],
          [
            151.37168103784265,
            131.5925312645366,
            35.12088213541559
          ]
        ],
        "point_var_name": "picked_point_in_model_ref",
        "transform_var_name": "model_in_model_ref",
        "error_var_name": "model_in_model_ref_error"
      },
      "dependencies": [
        "point_picker_for_reg"
      ]
    },
    {
      "type": "transform_obj_watcher",
      "name": "registration_result_watcher",
      "start_config": {
        "variable_name": "model_in_model_ref"
      }
    },
    {
      "type": "double_obj_watcher",
      "name": "registration_error_watcher",
      "start_config": {
        "variable_name": "model_in_model_ref_error"
      }
    },
    {
      "type": "transform_stabilizer",
      "name": "transform_picker_for_calib",
      "start_config": {
        "stable_type": "transform",
        "input_var_name": "probe_in_tool_ref",
        "output_var_name": "picked_probe_in_tool_ref",
        "linear_tolerance_mm": 0.05,
        "angular_tolerance_deg": 1,
        "temporal_interval_s": 3
      },
      "dependencies": [
        "ndi",
        "transform_tree"
      ]
    },
    {
      "type": "transform_obj_watcher",
      "name": "calibration_result_watcher",
      "start_config": {
        "variable_name": "tool_in_tool_ref"
      }
    },
    {
      "type": "empty_object",
      "name": "navigation",
      "dependencies": [
        "probe_visibility_watcher",
        "model_visibility_watcher",
        "tool_visibility_watcher",
        "ndi",
        "transform_tree"
      ]
    },
    {
      "type": "empty_object",
      "name": "reg_model",
      "dependencies": [
        "probe_visibility_watcher",
        "model_visibility_watcher",
        "picked_point_watcher_for_reg",
        "model_registrator",
        "registration_result_watcher",
        "registration_error_watcher"
      ]
    },
    {
      "type": "empty_object",
      "name": "calib_tool",
      "dependencies": [
        "probe_visibility_watcher",
        "tool_visibility_watcher",
        "transform_picker_for_calib",
        "calibration_result_watcher"
      ]
    }
  ]
}